deeplabcut.create_project.modelzoo
Functions:
| Name | Description |
|---|---|
create_pretrained_human_project |
LEGACY FUNCTION will be deprecated. |
create_pretrained_project |
Creates a new project directory, sub-directories and a basic configuration file. |
create_pretrained_project_pytorch |
Method used specifically for Pytorch-based ModelZoo models. |
create_pretrained_project_tensorflow |
Method used specifically for Tensorflow-based ModelZoo models. |
create_pretrained_human_project
create_pretrained_human_project(
project,
experimenter,
videos,
working_directory=None,
copy_videos=False,
video_extensions: str | Sequence[str] | None = None,
createlabeledvideo=True,
analyzevideo=True,
)
LEGACY FUNCTION will be deprecated.
Use deeplabcut.create_pretrained_project(project, experimenter, videos, model='full_human', ..)
For now just calls that function....
Creates a demo human project and analyzes a video with ResNet 101 weights pretrained on MPII Human Pose. This is from the DeeperCut paper by Insafutdinov et al. https://arxiv.org/abs/1605.03170 Please make sure to cite it too if you use this code!
Source code in deeplabcut/create_project/modelzoo.py
create_pretrained_project
create_pretrained_project(
project: str,
experimenter: str,
videos: list[str],
model: str | None = None,
working_directory: str | None = None,
copy_videos: bool = False,
video_extensions: str | Sequence[str] | None = None,
analyzevideo: bool = True,
filtered: bool = True,
createlabeledvideo: bool = True,
trainFraction: float | None = None,
engine: Engine = Engine.PYTORCH,
multi_animal: bool = False,
individuals: list[str] | None = None,
net_name: str | None = None,
detector_name: str | None = None,
)
Creates a new project directory, sub-directories and a basic configuration file. Change its parameters to your projects need.
The project will also be initialized with a pre-trained model from the DeepLabCut model zoo!
http://modelzoo.deeplabcut.org
Parameters
project : string String containing the name of the project.
string
String containing the name of the experimenter.
string | None, default = None,
The model / dataset to use as basis for the project. If None, the default model / dataset for the selected engine will be used.
list[string]
A list of string containing the full paths of the videos to include in the project.
string, optional, default = None
The directory where the project will be created. If None - the current working directory will be used.
bool, optional, default = False,
If this is set to True, the videos are copied to the videos directory.
If it is False, symlink of the videos are copied to the project/videos directory.
Note: on Windows: True is often necessary!
bool, optional
If true, then the video is analyzed and a labeled video is created. If false, then only the project will be created and the weights downloaded.
bool, default True
Indicates if filtered pose data output should be plotted rather than frame-by-frame predictions. Filtered version can be calculated with deeplabcut.filterpredictions()
bool, default True,
Specifies if a labeled video needs to be created.
float|None, default = None.
Fraction that will be used in dlc-model/trainingset folder name. If None - default value (0.95) from new projects will be used.
Engine, default Engine.PYTORCH,
engine on which the pretrained weights are based
bool = False,
Specifies if the project is single or multi-animal. Implemented only for Pytorch-based models.
list[str] | None = None,
Only if multianimal is True. Defines the names of the individuals.
str | None, default = None,
Valid only if using Pytorch engine. Name of the pose model on which the superanimal dataset has been trained on. If None - "hrnet_w32" will be used as default.
str | None, default = None,
Valid only if using Pytorch engine. Name of the detector model on which the superanimal dataset has been trained on. If None - "fasterrcnn_resnet50_fpn_v2" will be used as default.
Example
Linux/MacOs loading full_human model and analyzing video /homosapiens1.avi
deeplabcut.create_pretrained_project("humanstrokestudy", "Linus", ... ["/data/videos/homosapiens1.avi"], copy_videos=False)
Loading full_cat model and analyzing video "felixfeliscatus3.avi"
deeplabcut.create_pretrained_project("humanstrokestudy", "Linus", ... ["/data/videos/felixfeliscatus3.avi"], model="full_cat", engine=Engine.TF)
Windows:
deeplabcut.create_pretrained_project("humanstrokestudy", "Bill", ... [r'C:\yourusername\rig-95\Videos\reachingvideo1.avi'], ... r'C:\yourusername\analysis\project', copy_videos=True) Users must format paths with either: r'C:\ OR 'C:\ <- i.e. a double backslash \ \ )
Source code in deeplabcut/create_project/modelzoo.py
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create_pretrained_project_pytorch
create_pretrained_project_pytorch(
project: str,
experimenter: str,
videos: list[str],
dataset: str | None = None,
working_directory: str | None = None,
copy_videos: bool = False,
video_extensions: str | None = None,
analyze_video: bool = True,
filtered: bool = True,
create_labeled_video: bool = True,
train_fraction: float | None = None,
multi_animal: bool = False,
individuals: list[str] | None = None,
net_name: str | None = None,
detector_name: str | None = None,
)
Method used specifically for Pytorch-based ModelZoo models.
Creates a new project directory, sub-directories and a basic configuration file. Change its parameters to your projects need.
The project will also be initialized with a pre-trained model from the DeepLabCut model zoo!
http://modelzoo.deeplabcut.org
Parameters
project : string String containing the name of the project.
string
String containing the name of the experimenter.
string|None, default = None,
The superanimal dataset to use as basis for the project. If not specified - superanimal_quadruped will be used by default.
list[string]
A list of string containing the full paths of the videos to include in the project.
string, optional, default = None
The directory where the project will be created. If None - the current working directory will be used.
bool, optional, default = False,
If this is set to True, the videos are copied to the videos directory.
If it is False, symlink of the videos are copied to the project/videos directory.
Note: on Windows: True is often necessary!
bool, optional
If true, then the video is analyzed and a labeled video is created. If false, then only the project will be created and the weights downloaded.
bool, default True
Indicates if filtered pose data output should be plotted rather than frame-by-frame predictions. Filtered version can be calculated with deeplabcut.filterpredictions()
bool, default True
Specifies if a labeled video needs to be created.
float|None, default = None.
Fraction that will be used in dlc-model/trainingset folder name. If None - default value (0.95) from new projects will be used.
bool = False,
Specifies if the project is single or multi-animal
list[str]|None = None,
Only if multianimal is True. Defines the names of the individuals.
str | None, default = None,
Valid only if using Pytorch engine. Name of the pose model on which the superanimal dataset has been trained on. If None - "hrnet_w32" will be used as default.
str | None, default = None,
Valid only if using Pytorch engine. Name of the detector model on which the superanimal dataset has been trained on. If None - "fasterrcnn_resnet50_fpn_v2" will be used as default.
Example
Linux/MacOs loading full_human model and analyzing video /homosapiens1.avi
deeplabcut.create_pretrained_project_pytorch("humanstrokestudy", "Linus", ... ["/data/videos/homosapiens1.avi"], copy_videos=False)
Loading full_cat model and analyzing video "felixfeliscatus3.avi"
deeplabcut.create_pretrained_project_pytorch("humanstrokestudy", "Linus", ... ["/data/videos/felixfeliscatus3.avi"], model="full_cat", engine=Engine.TF)
Windows:
deeplabcut.create_pretrained_project_pytorch("humanstrokestudy", ... "Bill", [r'C:\yourusername\rig-95\Videos\reachingvideo1.avi'], ... r'C:\yourusername\analysis\project', copy_videos=True) Users must format paths with either: r'C:\ OR 'C:\ <- i.e. a double backslash \ \ )
Source code in deeplabcut/create_project/modelzoo.py
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create_pretrained_project_tensorflow
create_pretrained_project_tensorflow(
project: str,
experimenter: str,
videos: list[str],
model: str | None = None,
working_directory: str | None = None,
copy_videos: bool = False,
video_extensions: str | Sequence[str] | None = None,
analyzevideo: bool = True,
filtered: bool = True,
createlabeledvideo: bool = True,
trainFraction: float | None = None,
)
Method used specifically for Tensorflow-based ModelZoo models.
Creates a new project directory, sub-directories and a basic configuration file. Change its parameters to your projects need.
The project will also be initialized with a pre-trained model from the DeepLabCut model zoo!
http://modelzoo.deeplabcut.org
Parameters
project : string String containing the name of the project.
string
String containing the name of the experimenter.
string|None, default = None,
The model / dataset to use as basis for the project. If not specified - full_human will be used by default.
list[string]
A list of string containing the full paths of the videos to include in the project.
string, optional, default = None
The directory where the project will be created. If None - the current working directory will be used.
bool, optional, default = False,
If this is set to True, the videos are copied to the videos directory.
If it is False, symlink of the videos are copied to the project/videos directory.
Note: on Windows: True is often necessary!
bool, optional
If true, then the video is analyzed and a labeled video is created. If false, then only the project will be created and the weights downloaded.
bool, default True
Indicates if filtered pose data output should be plotted rather than frame-by-frame predictions. Filtered version can be calculated with deeplabcut.filterpredictions()
bool, default True
Specifies if a labeled video needs to be created.
float|None, default = None.
Fraction that will be used in dlc-model/trainingset folder name. If None - default value (0.95) from new projects will be used.
Example
Linux/MacOs loading full_human model and analyzing video /homosapiens1.avi
deeplabcut.create_pretrained_project_tensorflow("humanstrokestudy", ... "Linus", ["/data/videos/homosapiens1.avi"], copy_videos=False)
Loading full_cat model and analyzing video "felixfeliscatus3.avi"
deeplabcut.create_pretrained_project_tensorflow("humanstrokestudy", ... "Linus", ["/data/videos/felixfeliscatus3.avi"], model="full_cat", engine=Engine.TF)
Windows:
deeplabcut.create_pretrained_project_tensorflow("humanstrokestudy", ... "Bill", [r'C:\yourusername\rig-95\Videos\reachingvideo1.avi'], ... r'C:\yourusername\analysis\project', copy_videos=True) Users must format paths with either: r'C:\ OR 'C:\ <- i.e. a double backslash \ \ )
Source code in deeplabcut/create_project/modelzoo.py
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